Organic-Inorganic-Materials Chemistry Seminar Series
Department of Chemistry and Biochemistry

Dr. La’Shaye Cobley, California Air Resources Board
Friday, June 7th, 2024
3:00pm, Willamette 110 via Zoom
Hosted by the Alliance for Diversity in Science and Engineering (ADSE)

Navigating the Impacts of Human Activity on the Environment

Dr. Cobley is very passionate about public health, the environment, and mentoring diverse students in STEM. She received her PhD in Biology from the University of Utah and her BA in Biology and Africana Studies from Bowdoin College. During her graduate studies, Dr. Cobley used the leaf chemistries of urban plants to tell stories about air pollution in cities. Her research led her to pursue a career in science policy and she is currently a Staff Air Pollution Specialist at the California Air Resources Board. Dr. Cobley is also a board member of the nonprofit ADDSTEAM. In addition to talking about her dissertation research, Dr. Cobley will discuss various topics such as working in science policy, navigating STEM as a person of color, and how to smoothly changing career paths.

Organic/Inorganic/Materials Chemistry – Special Seminar

Illuminating the Patent Examination Process
Presented by: Patent Examiners from the United States Patent and Trademark Office
Wednesday, May 29th @ 12:30PM
Beetham Family Seminar Room, Knight Campus
Sponsored by the Department of Chemistry & Biochemistry and the Office of Innovation Partnership Services

The role of a patent examiner at the United States Patent and Trademark Office is to serve as advocate and protector of the public interest with respect to intellectual property, provide service and assistance to inventors, and evaluate the patentability of claimed inventions. In this presentation, we will describe the patent examination process and the laws applicable to determining patentability of inventions. Afterwards, we welcome a robust Q&A session from audience members. The patenting process can sometimes feel a bit like the Wizard of Oz, in that one does not know what goes on “behind the curtain” after the application is filed. This talk seeks to demystify the processes in evaluating patent applications.

Organic/Inorganic/Materials Chemistry Seminars
Boekelheide Lecture Series

Professor Graham Bodwell, Memorial University of Newfoundland
Hosted by Mike Haley

May 29, 2024 ·  2:00 pm, 115 Lawrence Hall

Synthesis, Properties and Chemistry of  Cyclophanes Containing Nonplanar  Polycyclic Aromatic Hydrocarbons

Nonplanar aromatic compounds are interesting molecules because they provide opportunities to learn how chemical and physical properties are affected by changes in structure.  Such compounds are challenging synthetic targets due to fact that they are strained, and the level of synthetic challenge typically increases with the amount of strain.  As a result, powerful synthetic methodology and effective general strategies are required to enable the synthesis of such compounds, especially those that are at more highly strained.  Details of our work aimed at the synthesis and study of cyclophanes that contain bent aromatic systems will be presented.

May 31, 2024 • 3:00 pm, 110 WIL Hall

[n](2,11) Teropyrenophanes: Models for Probing Armchair Edge Chemistry in Nanocarbons and a Platform for the Design of Mixed Cyclophanes with Unusual Properties

Teropyrene, a C36 PAH, is the largest PAH to have been systematically bent out of planarity through its incorporation into a series of [n]cyclophanes (those that consist of a single aromatic system and a single aliphatic bridge).[1] In this series of cyclophanes (1, n = 7-10), the end-to-end bend in the teropyrene ranges from q = 145° to 178°. The teropyrene system undergoes highly regioselective electrophilic aromatic substitution (bromination) and this can be understood in terms of a combination of steric and electronic effects. Furthermore, the chemical reactivity of the teropyrene system toward bromination increases substantially as it becomes more bent.[2] The K-regions can also be oxidized to afford diones that have been π-extended to afford a series of [n]heterocyclophanes. APEX chemistry has also been achieved with high regioselectivity in the synthesis of a cyclophane with C84 aromatic system.

More recently, a large, strained (SE = 44.2 kcal/mol) and conformationally flexible mixed [3.3]cyclophane of pyridine and teropyrene (2) was synthesized using two intramolecular Wurtz coupling reactions and an unprecedented Scholl reaction between the unreactive 2 positions of the pyrene systems in a triply-bridged pyrenophane.[3] Protonation of the pyridine unit results in a greatly enhanced preference for nesting in the cavity of the highly bent teropyrene system (qcalc = 162.6°) and emergence of a charge transfer absorption band (lmax = 592 nm) due to a long range (5.0-5.5 Å), through-space intramolecular transition between the teropyrene and pyridinium units, which does not exist in the neutral cyclophane

References
1. Unikela, K. S.; Ghods Ghasemabadi, P.; Houska, V.; Dawe, L. N.; Zhao, Y.; Bodwell, G. J. “Chem. – Eur. J. 2021, 27, 390–400
2. Unikela, K. S.; Roemmele, T. L.; Houska, V.; McGrath, K. E.; Tobin, D. M.; Dawe, L. N.; Boeré, R. T.; Bodwell, G. J. Angew. Chem. Int. Ed. 2018, 57, 1707–1711.
3. Ghods Ghasemabadi, P.; Tabasi, Z. A.; Salari, P.; Zhao, Y.; Bodwell, G. J. Chem. – Eur. J. 2023, 29, e202302404

Organic-Inorganic-Materials Chemistry Seminar Series
Department of Chemistry and Biochemistry

Professor Michael Ruggiero, University of Rochester

Friday, May 24, 2024
3:00 pm, WIL 110
Hosted by Chris Hendon

Designing Next-Generation Organic Semiconductors Through Phonon Engineering

Organic semiconductors (OSCs) are an exciting class of materials for advanced electronics. In contrast to inorganic semiconductors, OSCs can be processed in solution under benchtop conditions, enabling them to be engineered for a variety of applications, including flexible devices. However, OSCs are exhibit low charge-carrier mobilities (1-102 cm2 V-1 s-1) compared to their inorganic counterparts (103-105 cm2 V-1 s-1), limiting their utility. The origins of the reduced mobility in OSCs arise from a number of factors, but one of the most significant is electron-phonon coupling – particularly from low-frequency vibrations that are highly-excited at ambient conditions. In this work, recent efforts to generate a mode-resolved picture of electron-phonon coupling through a combined experimental and theoretical approach will be discussed, which provides insight into precisely which vibrational dynamics most strongly influence charge-carrier mobility. Such vibrations, termed ‘killer modes’ suggest that it is often only one or two mode-types that ultimately hinder charge transport in solids. Subsequently, this insight can be leveraged to mitigate detrimental phononic effects in OSCs by ‘phonon engineering’. The results of these efforts will be highlighted, and will showcase the powerful utility – as well as the supramolecular design pitfalls – that arise when subtle intermolecular forces are altered by chemical modification. Overall, this work highlights the powerful interplay between supramolecular design, electronic structure calculations, and vibrational spectroscopy for understanding electronic effects in OSCs, and suggests multiple paths forward for future work.

Department of Chemistry and Biochemistry
Physical Chemistry Seminar Series

Professor Kallol Gupta, Yale University
May 20, 2024—2:00pm
Tykeson 140
Hosted by: Jim Prell

A Nanmeter-Scale Macromolecular Cartography of the Cellular Membrane

The local molecular environment of the native membrane profoundly influences all aspects of membrane protein biology. Despite this, the most prevalent method of studying membrane  proteins uses detergent-like molecules that remove this critical local membrane context. This impedes our ability to quantitatively decipher the local molecular context and how it regulates structure, function, and biogenesis of membrane proteins. Addressing this, combining a  embrane-active-copolymers (MAP) library with MS based quantitative proteomics, lipidomics,  and native mass spectrometry, we present a quantitative molecular platform to determine macromolecular organization of membrane proteins and lipids in the cellular membrane with  nanoscale spatial resolution. Interfacing such capabilities with a range of bioanalytical  approaches, such as singlemolecule microscopy, EM-imaging, and biochemical assays, we aim to render a quantitative molecular view of how the local membrane context regulates the function of membrane proteins in human health and disease.

Department of Chemistry and Biochemistry
Physical Chemistry Seminar Series

Anastassia Alexandrova, UCLA
May 13, 2024
2:00pm in Tykeson 140
Hosted by: Alexander Batelaan

Enzymes as Molecular Capacitors

Proteins have been shown to produce intramolecular electric fields, preorganized to help enzymatic catalysis. Using IR probes placed in proteins, and measuring their Stark shift, it became possible to assess the local fields at the location of the probe, and correlate those with the reactivity. The talk will show that in fact, 3-D fields in the entirety of the active site (as opposed to a particular bond) are relevant to catalysis.

I will show that the diverging reactivity of the natural Fe-heme proteins is strongly regulated by the electric field from the protein, outside of the primary coordination sphere of the Fe. Next, I will use Protoglobin as a model, which was evolved to efficiently catalyze carbene transfer reactions, to show that what directed evolution developed is a highly strategic electric field that facilitates the reaction. The field is strongly heterogeneous and curvy, aligned opposite to the direction of the electron flow in the reaction. I will demonstrate that electric fields are dynamic. Each protein can visit several characteristic fields, only some of which are strongly catalytic, and some may promote different reaction mechanisms.

The talk will highlight several methods for field analysis, directly as a vector object, and indirectly via the scalar field of electronic charge density. These ideas and methods pertain to our understanding f how enzymes work, how they evolve toward acquiring a function, and how they should be designed to be competitive with natural enzymes.

Organic-Inorganic-Materials Chemistry Seminar Series
Department of Chemistry and Biochemistry

Grace Han, Brandeis University
May 10 2024
3:00 pm in WIL 110
Hosted by Carl Brozek

Light-Responsive Materials for a Sustainable Future: Exploring Optically-Controlled Functional Organic Systems

Light-responsive materials hold immense potential in revolutionizing various fields including solar energy conversion and storage, recyclable catalysis, single-molecule sensing, and reversible nanomaterial assembly. These materials exhibit phase transitions, changes in solubility, and nanoscale mechanical alterations triggered by external stimuli, particularly light, through molecular-level structural changes. While the photo-switching of molecules has primarily been studied in dilute solutions, understanding this process in condensed liquid or solid environments is crucial for successful real-world applications. Currently, there is a lack of fundamental knowledge regarding the interaction between light and molecules in condensed phases, as well as the impact of photomechanical switching on intermolecular interactions.

This presentation aims to elucidate the design principles behind optically-controllable materials that integrate organic photoswitches or solid-state photochromes. Extensive exploration of various photochromic core structures and functional groups has been conducted to gain insights into the structure-property relationship of these stimuli-responsive material systems. Additionally, the talk will introduce the application of photo-controlled materials in solar photon and thermal energy storage as well as sustainable catalysis.

Thermo Fisher Discovery and Impact Symposium Series
Organic/Inorganic/Materials Chemistry Seminar Series

Erdost Yildiz, Max Planck Institute for Intelligent Systems
May 3, 2024 · 3:00 pm
Beetham Family Seminar Room, Room 127 Knight Campus
Hosted by Teresa Rapp

Microscale Robotics as a Research Tool for Cellular Biophysics

The human body consists of diverse cellular environments, which leads to various therapeutic and diagnostic challenges for medical experts. While improvements and discoveries of new pharmaceutical agents, devices, and methods are ongoing, a deeper investigation of cellular biophysics is required. From this perspective, mobile microrobotics is an emerging field that revolutionizes medical applications in the diagnostics and therapeutics of various diseases.

Thanks to wireless manipulation methods with various physical forces, microrobots can mimic cellular functions, manipulate cells, and deliver pharmaceutical and physical treatment agents on a micro- scale. In this talk, I will focus on the usage of mobile microrobots to understand cellular biophysics and give some examples from different organ systems.