Publications

Marcus, A. H.; Matsika, S.; Heussman, D.; Sorour, M. I.; Maurer, J.; Albrecht, C. S.; Enkbaatar, L.; Herbert, P.; Kistler, K. A.; von Hippel, P. H., “Spectroscopic approaches for studies of site-specific DNA base and backbone ‘breathing’ using exciton-coupled dimer-labeled DNA.” Invited chapter for Springer Nature book series, Nucleic Acids and Molecular Biology. Volume title: Nucleic Acid Photophysics and Photochemistry. Edited by Spiridoula Matsika and Andrew H. Marcus. Executive editor: Dr. Sabine Schwarz. In press. Preprint available at: https://arxiv.org/abs/2403.16251.

Albrecht, C. S.; Scatena, L. F.; von Hippel, P. H.; Marcus, A. H., “Two-Photon Excitation Two-Dimensional Fluorescence Spectroscopy (2PE-2DFS) of the Fluorescent Nucleobase 6-MI,” Proc. SPIE, 2024, 12863, 1286305. https://doi.org/10.1117/12.3001802.

Maurer, J.; Albrecht, C. S.; Herbert, P.; Heussman, D.; Chang, A.; von Hippel, P. H.; Marcus, A. H., “Studies of DNA ‘Breathing’ in Exciton-Coupled (iCy3)2 Dimer-Labeled DNA Constructs by Polarization-Sweep Single-Molecule Fluorescence (PS-SMF) Microscopy,” Proc. SPIE, 2024, 12863, 128630C. https://doi.org/10.1117/12.3001962.

Heussman, D.; Enkhbataar, L.; Sorour, M.; Kistler, K.; von Hippel, P. H.; Matsika, S.; Marcus, A. H., “Using Transition Density Models to Interpret Experimental Optical Spectra of Exciton-Coupled Cyanine (iCy3)2 Dimer Probes of Local DNA Conformations At and Near Functional Protein Binding Sites,” Nucl. Acids Res. 2024, 52, 1272-1289. https://doi.org/10.1093/nar/gkad1163.

Maurer, J.; Albrecht, C. S.; Herbert, P.; Heussman, D.; Chang, A.; von Hippel, P. H.; Marcus, A. H., “Studies of DNA ‘Breathing’ by Polarization-Sweep Single-Molecule Fluorescence Microscopy of Exciton-Coupled (iCy3)2 Dimer-Labeled DNA Fork Constructs,” J. Phys. Chem. B, 2023, 127, 10730-10748.  https://pubs.acs.org/doi/full/10.1021/acs.jpcb.3c06463.

Sorour, M.; Marcus, A. H.; Matsika, S. “Unraveling the Origin of the Vibronic Spectral Signatures in an Excitonically Coupled Indocarbocyanine Cy3 Dimer,” J. Chem. Phys. A, 2023, 127, 9530-9540. Invited special issue article. https://pubs.acs.org/doi/10.1021/acs.jpca.3c06090.

Marcus, A. H.; Heussman, D.; Maurer, J.; Albrecht, C. S.; Herbert, P., von Hippel, P. H. “Studies of Local DNA Backbone Conformation and Conformational Disorder using Site-Specific Exciton-Coupled Probe Spectroscopy,” Annual Reviews of Physical Chemistry, 2023, 74, 245-265. Invited review article, https://www.annualreviews.org/doi/abs/10.1146/annurev-physchem-090419-041204.

Marcus, A. H.; Raymer, M. G. “JCP Special Topic on Quantum Light in Physical Chemistry and Molecular Spectroscopy,”J. Chem. Phys. 2022, 157, 150401. Invited article for JCP Special Issue, http://doi.org/10.1063/5.0127099.

Sorour, M.; Marcus, A. H.; Matsika, S. “Modeling of Electronic Absorption Spectra of the Indocarbocyanine Dye Cy3,” Molecules2022. 27, 4062. https://doi.org/10.3390/molecules27134062

Heussman, D.; Kittell, J.; von Hippel, P. H.; Marcus, A. H., “Temperature-Dependent Local Conformations and Conformational Heterogeneity of Cyanine Dimer Labeled Single-Stranded – Double-Stranded DNA Junctions by 2D Fluorescence Spectroscopy,” J. Chem. Phys., 2022. 156, 045101-1-23. Invited article for Special Issue on Time-Resolved Vibrational Spectroscopy. https://aip.scitation.org/doi/10.1063/5.0076261. Highlighted as an AIP Scilight Feature Article: https://aip.scitation.org/doi/10.1063/10.0009391, and on the Special Issue Cover: https://aip.scitation.org/action/showLargeCover?doi=10.1063%2Fjcp.2022.156.issue-4.

Sorour, M.; Kistler, K. A.; Marcus, A. H.; Matsika, S. “Accurate Modeling of Excitonic Coupling in Cyanine Dye Cy3,” J. Phys. Chem. A, 2021. 125, 7852-7866. Invited article for Special Issue: 125 Years of the Journal of Physical Chemistry. https://doi.org/10.1021/acs.jpca.1c05556.

Israels, B.; Albrecht, C. S.; Dang, A.; Barney, M.; von Hippel, P. H.; Marcus, A. H. “Sub-Millisecond Conformational Transitions of Single-Stranded DNA Lattices by Photon Correlation Single-Molecule FRET,” J. Phys. Chem. B, 2021. 125, 9426-9440. https://pubs.acs.org/doi/full/10.1021/acs.jpcb.1c04119.

Raymer, M. G.; Landes, T.; Marcus, A. H. “Entangled Two-Photon Absorption by Atoms and Molecules: A Quantum Optics Tutorial” J. Chem. Phys., 2021. 155, 081501-1-25.  Invited article for Special Issue: Quantum Light Molecular Spectroscopy. https://doi.org/10.1063/5.0049338. Highlighted on the Special Issue Cover. https://aip.scitation.org/action/showLargeCover?doi=10.1063%2Fjcp.2021.155.issue-8Selected as 2021 JCP Editor’s Choice. https://aip.scitation.org/toc/jcp/collection/10.1063/jcp.2022.EDCH2021.issue-1.

Landes, T.; Raymer, M. G.; Allgaier, M.; Merkouche, S.; Smith, B. J.; Marcus A. H. “Quantifying the Enhancement of Two-Photon Absorption due to Spectral-Temporal Entanglement,” Optics Express, 2021. 29, 20022-20033. http://doi.org/10.1364/OE.422544.

Raymer, M. G.; Landes, T.; Allgaier, M.; Merkouche, S.; Smith, B. J.; Marcus A. H. “How Large is the Quantum Enhancement by Time-Frequency Entanglement of Photon Pairs?” Optica20218, 757-758.; https://doi.org/10.1364/OPTICA.426674.

Raymer, M. G.; Landes, T.; Allgaier, M.; Merkouche, S.; Smith, B. J.; Marcus A. H. “Two-Photon Absorption of Molecules by Time-Frequency-Entangled Photon Pairs: The Roles of Photon-Number Correlations and Spectral Correlations,” Published 2021 on https://arxiv.org/abs/2012.05375.

Landes, T.; Merkouche, S.; Allgaier, M.; Smith, B. J.; Marcus, A. H.; Raymer, M. G. “Experimental Feasibility of Molecular Two-Photon Absorption with Isolated Time-Frequency-Entangled Photon Pairs,” Physical Review Research, 2021. 3, 033154-1-9. https://doi.org/10.1103/PhysRevResearch.3.033154.

Beyerle, E. R.; Dinpahjooh, M.; Ji, H.; Romano, P. G.; von Hippel, P. H.; Marcus, A. H.; Guenza, M. G. “Dinucleotides as Simple Models of the Base Stacking-Unstacking Component of DNA ‘Breathing’ Mechanisms,” Nucleic Acids Research, 2021. 49, 1872 – 1885. https://doi.org/10.1093/nar/gkab015. PMCID: PMC7913701.

Tamimi, A.; Landes, T.; Lavoie, J.; Raymer, M. G.; Marcus, A. H. “Fluorescence-Detected Fourier Transform Electronic Spectroscopy by Phase-Tagged Photon Counting,” Optics Express, 2020. 28, 25194 – 25214. https://doi.org/10.1364/OE.400245.

Mukamel, S.; Freyberger, M.; Schleich, W.; Bellini, M.; Zavatta, A.; Leuchs, G.; Siberhorn, C.; Boyd, R.; Sanchez Soto, L.; Stefanov, A.; Barbieri, M.; Paterova, A.; Krivitskiy, L.; Shwartz, S.; Tamasaku, K.; Dorfman, K.; Schlawin, F.; Sandoghdar, V.; Raymer, M. G.; Marcus, A. H.; Varnaski, O.; Goodson III, T.; Zhou, Z.; Shi, B.-S.; Asban, S.; Scully, M.; Zhang, Z.; Peng, T.; Vartaniants, I.; del Valle, E.; Laussy, F., “Nonlinear Optical Coherent Spectroscopy with Entangled Photon Pairs” by Michael Raymer and Andrew Marcus, Invited contribution to “Roadmap on Quantum Light Spectroscopy,” Topical Review edited by Shaul Mukamel, J. Phys. B: Atomic, Molecular and Optical Physics, 2020. 53, 72002. https://doi.org/10.1088/1361-6455/ab69a8

Lavoie, J.; Landes, T.; Tamimi, A.; Smith, B. J.; Marcus, A. H.; Raymer, M. G. “Phase-Modulated Interferometry, Spectroscopy and Refractometry using Entangled Photon-Pairs,” Adv. Quantum Technol., 2020. 1900114-1-15, https://doi.org/10.1002/qute.201900114.

von Hippel, P. H.; Marcus, A. H. “The Many Roles of Binding Cooperativity in DNA Replication,” Invited New and Notable Commentary for Biophysical Journal. (Related to Kozlov, Shinn and Lohman Article, Biophysical Journal, 2019, 117, 2120-2140.) Biophysical Journal, 2019. 117, 2043 – 2046, doi.org/10.1016/j.bpj.2019.10.029. PMID: 31708164. PMCID: PMC6895729.

Ji, H.; Johnson, N. P.; von Hippel, P. H.; Marcus, A. H. “Local DNA Base Conformations and Ligand Intercalation in DNA Constructs Containing Optical Probes,” Biophysical Journal, 2019. 117, 1101-1115, doi: 10.1016/j.bpj.2019.08.006. PMID: 31474304. PMCID: PMC6818173.

Heussman, D.; Kittell, J.; Kringle, L.; Tamimi, A.; von Hippel, P. H.; Marcus, A. H. “Measuring Local Conformations and Conformational Disorder of (Cy3)2 Dimer Labeled DNA Fork Junctions using Absorbance, Circular Dichroism and Two-Dimensional Fluorescence Spectroscopy,” Invited research article for themed collection: Ultrafast Photo-Induced Energy and Charge Transfer, Faraday Discussions, 2019. 216, 211-235. doi: 10.1039/C8FD00245B. PMID: 31038134. PMCID: PMC7008976.

Kringle, L.; Sawaya, N.; Widom, J. R.; Adams, C.; Raymer, M. G.; Aspuru-Guzik, A.; Marcus, A. H., “Temperature-Dependent Conformations of Exciton-Coupled Cy3 Dimers in Double Stranded DNA,” J. Chem. Phys. 2018. 148, 085101-1-13. https://aip.scitation.org/doi/10.1063/1.5020084Selected as an Editor’s Pick and Issue Cover Page Feature Article. PMID: 29495791. PMCID: PMC5826741. https://aip.scitation.org/action/showLargeCover?doi=10.1063%2Fjcp.2018.148.issue-8.

Phelps, C.; Israels, B.; Jose, D.; Marsh, M. C.; von Hippel, P. H.; Marcus, A. H. “Using Microsecond Single-Molecule FRET to Determine the Assembly Pathways of T4 ssDNA Binding Protein onto Model DNA Replication Forks,” Proc. Nat. Acad. Sci. Plus, 2017. 114, E3612-E3621. doi: 10.1073/pnas.1619819114 PMID: 24062430. PMCID: PMC38085625.

Phelps, C.; Israels, B.; Jose, D.; Marsh, M. C.; von Hippel, P. H.; Marcus, A. H. “Using Multi-Order Time Correlation Functions (TCFs) to Elucidate Biomolecular Reaction Pathways from Microsecond Single-Molecule Fluorescence Experiments,” J. Phys. Chem. B, 2016. 120, 13003-13016. doi: 10.1021/acs.jpcb.6b08449 PMID: 28416680. PMCID: PMC5422767.

Lee, W.; Gillies, J. P.; Jose, D.; Israels, B. A.; von Hippel, P. H.; Marcus, A. H. “Single-Molecule FRET Studies of the Cooperative and Non-Cooperative Binding Kinetics of the Bacteriophage T4 Single-Stranded DNA Binding Protein (gp32) to ssDNA Lattices at Replication Fork Junctions,” Nucl. Acids Res., 2016, 44, 10691-10710.  doi: 10.1093/nar/gkw863.

Karki, K. J.; Kringle, L.; Marcus, A. H.; Pullerits, T. “Phase-Synchronous Detection of Coherent and Incoherent Nonlinear Signals,” J. Optics, 2016, 18, 015504 (7pp). doi:10.1088/2040-8978/18/1/015504.

Johnson, N. P.; Ji, H.; Steinberg, T. H.; von Hippel, P. H.; Marcus, A. H. “Sequence-Dependent Conformational Heterogeneity and Proton Transfer Reactivity of the Fluorescent Guanine Analog 6-Methyl Isoxanthoptherin (6-MI) in DNA,” J. Phys. Chem. B, 2015, 119, 12798-12807.

Saif, M.; Widom, J. R.; Xu, S.; Abbey, E. R.; Liu, S.-Y.; Marcus, A. H. “Electric Dipole Transition Moments and Solvent-Dependent Interactions of Fluorescent Boron-Nitrogen Substituted Indole Derivatives,” J. Phys. Chem. B, 2015, 119 (25), 7985-7993.

Pachón, L. A.; Marcus, A. H.; Aspuru-Guzik, A. “Quantum Process Tomography by 2D Fluorescence Spectroscopy,” J. Chem. Phys., 2015, 142, 212442-1-10.

Karki, K. J.; Widom, J. R.; Seibt, J.; Moody, I.; Lonergan, M. C.; Pullerits, T.; Marcus, A. H. “Coherent Two-Dimensional Photocurrent Spectroscopy in a PbS Quantum Dot Photocell,” Nature Communications, 2014, 5, 5869-1-7.

Lee, W.; von Hippel, P. H.; Marcus, A. H. “Internally Labeled Cy3 / Cy5 DNA Constructs Show Greatly Enhanced Photostability in Single-Molecule FRET Experiments,” Nucleic Acids Research, 2014, 42, 5967 – 5977.

Raymer, M. G.; Marcus, A. H.; Widom, J. R.; Vitullo, D. L. P. “Entangled Photon-Pair Two Dimensional Fluorescence Spectroscopy (EPP-2DFS),” Prof. Michael D. Fayer Festschrift special issue, guest editors: A. H. Marcus, M. A. Berg, and J. Zheng, J. Phys. Chem. B, 2013, 117, 15559-15575.

Phelps, C.; Lee, W.; Jose, D.; von Hippel, P. H.; Marcus, A. H. “Single-Molecule FRET and Linear Dichroism Studies of DNA ‘Breathing’ and Helicase Binding at Replication Fork Junctions,” Proc. Nat. Acad. Sci., 2013, 110, 17320 – 17325. Selected for editorial commentary: Fei, J.; Ha, T. “Watching DNA breathe one molecule at a time,” Proc. Nat. Acad. Sci., 2013, 110, 17173 – 17174.

von Hippel, P. H.; Johnson, N. P.; Marcus, A. H. “50 Years of DNA ‘Breathing’: Reflections on Old and New Approaches,” special issue of Biopolymers: 50th anniversary of Nucleic Acids Research, Biopolymers, 2013, 99, 923 – 954 (invited and refereed review article).

Marcus, A. H.; Berg, M. A.; Zheng, J. “Tribute to Michael D. Fayer,” For Prof. Michael D. Fayer Festchrift special issue, guest editors: A. H. Marcus, M. A. Berg, and J. Zheng, Journal of Physical Chemistry B, 2013, 117, 15235-15236.

Marcus, A. H.; Berg, M. A.; Zheng, J. “Biography of Michael D. Fayer,” For Prof. Michael D. Fayer Festchrift special issue, guest editors: A. H. Marcus, M. A. Berg, and J. Zheng, Journal of Physical Chemistry B, 2013, 117, 15237 – 15237.

Karki, K. J.; Torbjornsson, M.; Widom, J. R.; Marcus, A. H.; Pullerits, T. “Digital Cavities and their Potential Applications,” Journal of Instrumentation, 2013, 8, T05005-1-12.

Lee, W.; Jose, D.; Phelps, C.; Marcus, A. H; von Hippel, P. H. “A Single-Molecule View of the Assembly Pathway, Subunit Stoichiometry and Unwinding Activity of the Bacteriophage T4 Primosome (Helicase-Primase) Complex,” Biochemistry,2013, 52, 3157 – 3170.

Widom, J. R.; Perdomo-Ortiz, A.; Lee, W.; Rappoport, D.; Molinski, T. F.; Aspuru-Guzik, A.; Marcus, A. H. “Temperature-Dependent Conformations of a Membrane Supported ‘Zinc Porphyrin Tweezer’ by 2D Fluorescence Spectroscopy,” Invited research article for special issue Prof. John C. Wright Festschrift. J. Phys. Chem. A. 2013, 117, 6171 – 6184. Doi: http://dx.doi.org/10.1021/jp400394z.

Widom, J. R.; Johnson, N. P.; von Hippel, P. H.; Marcus, A. H. “Solution Conformation of 2-Aminopurine (2-AP) Dinucleotide by Ultraviolet 2D Fluorescence Spectroscopy (UV-2D FS),” Invited research article for special issue on 2D optical coherence spectroscopy, New Journal of Physics, 2013, 15, 025028-1-16.

Widom, J. R.; Rappoport, D.; Perdomo-Ortiz, A.; Thomsen, H.; Johnson, N. P.; von Hippel, P. H.; Aspuru-Guzik, A.; Marcus, A. H. “Electronic Transition Moments of 6-Methyl Isoxanthoptherin (6-MI) – A Fluorescent Analog of Guanine,” Nucleic Acids Research, 2013, 41, 995 – 1004.

Sanders, J. N.; Saikin, S. K.; Mostame, S.; Andrade, X.; Widom, J. R.; Marcus, A. H.; Aspuru-Guzik, A. “Compressed Sensing for Multidimensional Spectroscopy Experiments,” J. Phys. Chem. Lett. 2012, 3, 2697-2702.

Perdomo, A.; Widom, J. R.; Lott, G. A.; Aspuru-Guzik, A.; Marcus, A. H. “Conformation and Electronic Population Transfer in Membrane Supported Self-Assembled Porphyrin Dimers by Two-Dimensional Fluorescence Spectroscopy,” J. Phys. Chem. B 2012, 116, 10757-10770.

Datta, K.; Johnson, N. P.; Villani, G.; Marcus, A. H.; von Hippel, P. H. “Characterization of the 6-Methyl Isoxanthoptherin (6-MI) Base Analogue Dimer, A Spectroscopic Probe for Monitoring Guanine Base Conformation at Specific Sites in Nucleic Acids,” Nucl. Acids Res., 2012, 40, 1191-202.

Lott, G. A.; Perdomo-Ortiz, A.; Utterback, J. K.; Widom, J. R.; Aspuru-Guzik, A.; Marcus, A. H. “Conformation of Self-Assembled Porphyrin Dimers in Liposome Vesicles by Phase-Modulation 2D Fluorescence Spectroscopy,” Proc. Nat. Acad. Sci., 2011, 108, 16521-16526.

Senning, E. N.; Marcus, A. H. “Subcellular Dynamics and Protein Conformation Fluctuations Measured by Fourier Imaging Correlation Spectroscopy,” Ann. Rev. Phys. Chem., 2010, 61, 111-128.

Senning, E. N.; Marcus, A. H. “Actin Polymerization Driven Mitochondrial Transport in Mating S. cerevisiae,” Proc. Nat. Acad. Sci., 2010, 107, 721-725.

Senning, E. N.; Lott, G. A.; Fink, M. C.; Marcus, A. H. “II. Kinetic Pathways of Switching Optical Conformations in DsRed by 2D Fourier Imaging Correlation Spectroscopy.” J. Phys. Chem. B 2009, 113, 6854-6860.

Lott, G. A.; Senning, E. N. ; Fink, M. C.; Marcus, A. H. “I. Conformational Dynamics of Biological Macromolecules by Polarization-Modulated Fourier Imaging Correlation Spectroscopy.” J. Phys. Chem. B 2009, 113, 6847-6853.

Fink, M. C.; Marcus, A. H. “Simultaneous Measurement of Fluorescence Anisotropy and Translational Fluctuations by Polarization-Modulated MFICS,” Philosophical Magazine 2008, 88, 3947 – 3951.

Senning, E. N.; Lott, G. A.; Marcus, A. H. “Fourier Imaging Correlation Spectroscopy for Studies of Intracellular Structure-Function,” Meths. Cell Biol. 2008, 90, 117-137.

Tekavec, P. F.; Lott, G. A.; Marcus, A. H. “Fluorescence-Detected Two-Dimensional Electronic Coherence Spectroscopy by Acousto-Optic Phase Modulation,” J. Chem. Phys. 2007, 127, 214307-1-21.

Goulding, M. B.; Canman, J. C.; Senning, E. N.; Marcus, A. H.; Bowerman, B. “Control of Nuclear Centration in the C. elegans Zygote by Receptor-Independent G Signaling and Myosin II,” J. Cell Biol. 2007, 178, 1177-1191.

Tekavec, P. F.; Dyke, T. R.; Marcus, A. H. “Wave Packet Interferometry and Quantum State Reconstruction by Acousto-Optic Phase Modulation,” J. Chem. Phys. 2006, 125, 194303-1-19.

Fink, M. C.; Adair, K. V.; Guenza, M. G.; Marcus, A. H. “Translational Diffusion of Fluorescent Proteins by Molecular Fourier Imaging Correlation Spectroscopy,” Biophys. J. 2006, 91, 3482 – 3498.

Knowles, M. K.; Honerkamp-Smith, A. R.; Marcus, A. H. “Direct Measurement of the Relative and Collective Diffusion in a Dilute Binary Suspension of Colloidal Particles,” J. Chem. Phys. 2005, 122, 234909-1-13.

Capaldi, R. A., R. Aggeler, R. Gilkerson, G. Hanson, M. Knowles, A. Marcus, D. Margineantu, M. Marusich, J. Murray, D. Oglesbee, S. J. Remington, and R. Rossignol, “A replicating module as the unit of mitochondrial structure and functioning.” Biochim. Biophys. Acta: Bioenergetics, 2002, 1555, 192-195.

Knowles, M. K.; Guenza, M. G.; Capaldi, R. A.; Marcus, A. H. “Cytoskeletal-Assisted Dynamics of the Mitochondrial Reticulum in Living Cells,” Proc. Nat. Acad. Sci. 2002, 99, 14772 – 14777.

Margineantu, D.; Brown, R. M.; Brown, G. K.; Marcus, A. H.; Capaldi, R. A. “Heterogeneous Distribution of Pyruvate Dehydrogenase in the Matrix of Mitochondria,” Mitochondrion 2002, 1, 327 – 338.

Grassman, T. J.; Knowles, M. K.; Marcus, A. H. “Structure and Dynamics of Fluorescently Labeled Complex Fluids by Fourier Imaging Correlation Spectroscopy,” Phys. Rev. E 2000, 62, 8245 – 8257.

Knowles, M. K.; Grassman, T. J.; Marcus, A. H. “Measurement of the Dynamic Structure Function of Fluorescently Labeled Complex Fluids by Fourier Imaging Correlation Spectroscopy,” Phys. Rev. Lett. 2000, 85, 2837 – 2840.

Margineantu, D.; Capaldi, R. A.; Marcus, A. H. “Dynamics of the Mitochondrial Reticulum in Live Cells using Fourier Imaging Correlation Spectroscopy and Digital Video Microscopy,” Biophys. J. 2000, 79, 1833 – 1849 (feature cover article). Editorial comment: Schurr, J. M. “Molecular Motions in Fourier Transform Space,” Biophys. J. 2000, 79, 1692 – 1694.

Marcus, A. H.; Schofield, J.; Rice, S. A. “Experimental Observations of Non-Gaussian Behavior and String-like Cooperative Dynamics in Concentrated Quasi-Two-Dimensional Colloidal Liquids,” Phys. Rev. E 1999, 60, 5725 – 5736.

Tam, M. C.-M.; Rice, S. A.; Marcus, A. H. “Unusual Structure in a Quasi-Two-Dimensional Binary Colloidal Fluid,” Chem. Phys. Lett. 1998, 294, 217 – 222.

Marcus, A. H.; Rice, S. A. “Phase Transitions in a Confined Quasi-Two-Dimensional Colloid Suspension,” Phys. Rev. E 1997, 55, 637 – 656.

Schofield, J.; Marcus, A. H.; Rice, S. A. “Dynamics of Quasi-Two-Dimensional Colloidal Systems,” J. Phys. Chem. 1996, 100, 18950 – 18961.

Marcus, A. H.; Rice, S. A. “Observation of First Order Liquid-to-Hexatic and Hexatic-to-Solid Phase Transitions in a Confined Colloid Suspension,” Phys. Rev. Lett. 1996, 77, 2577 – 2580.

Marcus, A. H.; Lin, B.; Rice, S. A. “Self-Diffusion in Dilute Quasi-Two-Dimensional Hard Sphere Suspensions: Evanescent Wave Dynamic Light Scattering and Video Microscopy Studies,” Phys. Rev. E 1996, 53, 1765 – 1776.

Marcus, A. H.; Morkved, T.; Jaeger, H.; Rice, S. A.; Hussey, D.; Diachun, N. A.; Fayer, M. D. “Chromophore-Rich Nanodomains in Bulk and Ultra-Thin Film Polymer Blends,” Mol. Cryst. Liq. Cryst. 1996, 283, 31 – 35.

Leezenberg, P. B.; Marcus, A. H.; Fayer, M. D.; Frank, C. W. “Rotational Dynamics of Naphthalene-Labeled Cross-link Junctions in Poly(dimethylsiloxane) Elastomers,” J. Phys. Chem. 1996, 100, 7646 – 7655.

Marcus, A. H.; Hussey, D. M.; Diachun, N. A.; Fayer, M. D. “Nanodomain Formation in a Liquid Polymer Blend: the Initial Stages of Phase Separation,” J. Chem. Phys. 1995, 103, 8189 – 8201.

Marcus, A. H.; Fayer, M. D.; Curro, J. G. “Intermolecular Structure in a Single Component Polymer Glass: Towards High Resolution Measurements of the Side Chain Pair Correlation Function,” J. Chem. Phys. 1994, 100, 9156 – 9169.

Diachun, N. A.; Marcus, A. H.; Hussey, D. M.; Fayer, M. D. “Dynamics in Polydimethylsiloxane: The Effect of Solute Polarity,” J. Am. Chem. Soc. 1994, 116, 1027 – 1032.

Finger, K. U.; Marcus, A. H.; Fayer, M. D. “Structure of Complex Systems using Electronic Excitation Transport: Theory, Monte Carlo Simulations, and Experiments on Micelle Solutions,” J. Chem. Phys. 1994, 100, 271 – 286.

Marcus, A. H.; Diachun, N. A.; Fayer, M. D. “Intermolecular Structure in a Polymer Glass: Electronic Excitation Transfer Studies,” Macromolecules 1993, 26, 3041 – 3048.

Quitevis, E. L.; Marcus, A. H.; Fayer, M. D. “Dynamics of Ionic Lipophilic Probes in Micelles: Picosecond Fluorescence Depolarization Measurements,” J. Phys. Chem. 1993, 97, 5762 – 5769.

Marcus, A. H.; Diachun, N. A.; Fayer, M. D. “Electronic Excitation Transfer in Concentrated Micelle Solutions,” J. Phys. Chem. 1992, 96, 8930 – 8937.

Stein, A. D.; Hoffmann, D. A.; Marcus, A. H.; Leezenberg, P. B.; Frank, C. W.; Fayer, M. D. “Dynamics in Poly(dimethylsiloxane) Melts: Fluorescence Depolarization Measurements of Probe Chromophore Orientational Relaxation, ” J. Phys. Chem. 1992, 96, 5255 – 5263.

Marcus, A. H.; Fayer, M. D. “Electronic Excitation Transfer in Clustered Chromophore Systems: Calculations of Time-Resolved Observables for Intercluster Transfer,” J. Chem. Phys. 1991, 94, 5622 – 5630.

Marcus, A. H.; Molinski, T. F.; Fahy, E.; Faulkner, D. J.; Xu, C.; Clardy, J. “5-Isothiocyanatopupukeanane from a Sponge of the Genus Axinyssa,” J. Org. Chem. 1989, 54, 5184 – 5188.

Zabriskie, T. M.; Klocke, K. A.; Ireland, C. M.; Marcus, A. H.; Molinski, T. F.; Faulkner, D. J.; Xu, C.; Clardy, J. “Jaspamide, a Modified Peptide from a Jaspis Sponge, with Insecticidal and Anti-fungal Activity,” J. Am. Chem. Soc. 1986, 108, 3123 – 3126.